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eRAM

encyclopedia of Rare Disease Annotation for Precision Medicine



   refsum disease
  

Disease ID 148
Disease refsum disease
Definition
An autosomal recessive familial disorder that usually presents in childhood with POLYNEUROPATHY; SENSORINEURAL HEARING LOSS; ICHTHYOSIS; ATAXIA; RETINITIS PIGMENTOSA; and CARDIOMYOPATHIES. (From Joynt, Clinical Neurology, 1991, Ch37, p58-9; Rev Med Interne 1996;17(5):391-8) This condition can be caused by mutation in the genes encoding peroxisomal phytanoyl-CoA hydroxylase or proteins associated peroxisomal membrane, leading to impaired catabolism of PHYTANIC ACID in PEROXISOMES.
Synonym
adult refsum disease
adult refsum diseases
classic refsum disease
classic refsum diseases
disease refsum
disease refsum's
disease refsums
disease, adult refsum
disease, classic refsum
disease, refsum
disease, refsum's
diseases, adult refsum
diseases, classic refsum
hemeralopia heredoataxia polyneuritiformis
hereditary motor and sensory neuropathy iv
hereditary motor and sensory neuropathy type iv
hereditary motor and sensory neuropathy, type iv
hereditary sensory-motor neuropathy, type iv
hereditary type iv motor and sensory neuropathy
hereditary type iv motor sensory neuropathy
heredoataxia hemeralopica polyneuritiformis
heredoataxia polyneuritiformis, hemeralopia
heredoataxic atactica polyneuritiformis
heredoataxic hemeralopica polyneuritiformis
heredopathia atactica polyneuritiformis
hmsn 4
hmsn iv
hmsn ivs
hmsn type iv
hmsn4
hsmn iv
neuropathy hereditary motor sensory type iv
neuropathy, hereditary motor and sensory, type iv
neuropathy, hypertrophic of refsum
phytanic acid oxidase deficiency
phytanic acid storage dis
phytanic acid storage disease
phytanic acid storage disease (disorder)
polyneuritiformis, hemeralopia heredoataxia
polyneuritiformis, heredopathia atactica
refsum dis
refsum disease [disease/finding]
refsum disease, adult
refsum disease, classic
refsum diseases, adult
refsum diseases, classic
refsum syndrome
refsum thiebaut syndrome
refsum's disease
refsum's syndrome
refsum-thiebaut disease
refsum-thiebaut syndrome
refsum-thiebaut syndromes
refsum-thiébaut disease
refsums dis
refsums disease
refsums syndrome
syndrome, refsum
syndrome, refsum's
syndrome, refsum-thiebaut
syndromes, refsum-thiebaut
Orphanet
OMIM
DOID
ICD10
UMLS
C0034960
MeSH
SNOMED-CT
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:6)
5828  |  PEX2  |  UNIPROT
5264  |  PHYH  |  CLINVAR;CTD_human;GHR;ORPHANET;UNIPROT
55670  |  PEX26  |  UNIPROT
5189  |  PEX1  |  UNIPROT
5830  |  PEX5  |  UNIPROT
5191  |  PEX7  |  CLINVAR;CTD_human;GHR;ORPHANET;UNIPROT
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:40)
30  |  ACAA1  |  2.407  |  DISEASES
55256  |  ADI1  |  3.747  |  DISEASES
153  |  ADRB1  |  1.377  |  DISEASES
224  |  ALDH3A2  |  2.956  |  DISEASES
23600  |  AMACR  |  2.231  |  DISEASES
1174  |  AP1S1  |  3.2  |  DISEASES
54840  |  APTX  |  2.071  |  DISEASES
85300  |  ATCAY  |  3.003  |  DISEASES
54677  |  CROT  |  3.076  |  DISEASES
55157  |  DARS2  |  3.01  |  DISEASES
1859  |  DYRK1A  |  1.566  |  DISEASES
54942  |  FAM206A  |  4.308  |  DISEASES
23732  |  FRRS1L  |  3.126  |  DISEASES
11146  |  GLMN  |  2.817  |  DISEASES
10020  |  GNE  |  1.772  |  DISEASES
8443  |  GNPAT  |  3.433  |  DISEASES
26061  |  HACL1  |  3.103  |  DISEASES
3032  |  HADHB  |  2.369  |  DISEASES
3066  |  HDAC2  |  1.133  |  DISEASES
3295  |  HSD17B4  |  3.661  |  DISEASES
3745  |  KCNB1  |  2.027  |  DISEASES
51360  |  MBTPS2  |  2.308  |  DISEASES
8972  |  MGAM  |  1.209  |  DISEASES
4541  |  MT-ND6  |  1.69  |  DISEASES
4566  |  MT-TK  |  2.029  |  DISEASES
4688  |  NCF2  |  1.797  |  DISEASES
27035  |  NOX1  |  1.331  |  DISEASES
5195  |  PEX14  |  3.501  |  DISEASES
5828  |  PEX2  |  2.683  |  DISEASES
5830  |  PEX5  |  6.938  |  DISEASES
253260  |  RICTOR  |  1.582  |  DISEASES
6223  |  RPS19  |  1.564  |  DISEASES
6277  |  S100A6  |  1.372  |  DISEASES
26278  |  SACS  |  3.38  |  DISEASES
6342  |  SCP2  |  3.895  |  DISEASES
5268  |  SERPINB5  |  1.042  |  DISEASES
56904  |  SH3GLB2  |  3.544  |  DISEASES
10478  |  SLC25A17  |  2.125  |  DISEASES
6513  |  SLC2A1  |  1.413  |  DISEASES
7272  |  TTK  |  2.041  |  DISEASES
Locus
Symbol | Locus(Total Locus:2)
PEX7  |  6q23.3
PHYH  |  10p13
Disease ID 148
Disease refsum disease
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:56)
HP:0000639  |  Nystagmus
HP:0001765  |  Hammertoe
HP:0010864  |  Intellectual disability, severe
HP:0002654  |  Multiple epiphyseal dysplasia
HP:0000568  |  Microphthalmia
HP:0000518  |  Cataract
HP:0000496  |  Abnormality of eye movement
HP:0000616  |  Miosis
HP:0007256  |  Abnormal pyramidal signs
HP:0012211  |  Renal functional abnormality
HP:0003474  |  Sensory impairment
HP:0002164  |  Nail dysplasia
HP:0002376  |  Developmental regression
HP:0005930  |  Abnormality of epiphysis morphology
HP:0000508  |  Ptosis
HP:0000083  |  Renal insufficiency
HP:0001635  |  Congestive heart failure
HP:0001251  |  Ataxia
HP:0002652  |  Skeletal dysplasia
HP:0009830  |  Peripheral neuropathy
HP:0007141  |  Mixed polyneuropathy
HP:0000407  |  Sensorineural hearing impairment
HP:0011675  |  Arrhythmias
HP:0003202  |  Skeletal muscle atrophy
HP:0004374  |  Hemiplegia/hemiparesis
HP:0010571  |  Elevated levels of phytanic acid
HP:0010049  |  Short metacarpal
HP:0000478  |  Abnormality of the eye
HP:0004689  |  Short 4th long bone of foot
HP:0002093  |  Respiratory insufficiency
HP:0000616  |  Constricted pupils
HP:0001265  |  Decreased tendon reflexes
HP:0000662  |  Poor night vision
HP:0000458  |  Anosmia
HP:0003690  |  Limb weakness
HP:0000529  |  Progressive visual loss
HP:0001760  |  Abnormality of the foot
HP:0007703  |  Abnormality of retinal pigmentation
HP:0001761  |  Pes cavus
HP:0001939  |  Abnormality of metabolism/homeostasis
HP:0001638  |  Cardiomyopathy
HP:0012722  |  Heart block
HP:0001744  |  Splenomegaly
HP:0000504  |  Abnormality of vision
HP:0000505  |  Visual impairment
HP:0000958  |  Dry skin
HP:0000488  |  Retinopathy
HP:0000510  |  Retinitis pigmentosa
HP:0002922  |  Increased CSF protein
HP:0001640  |  Increased heart size
HP:0000407  |  sensorineural hearing loss
HP:0000546  |  Retinal degeneration
HP:0001252  |  Muscular hypotonia
HP:0000508  |  Drooping upper eyelid
HP:0008064  |  Ichthyosis
HP:0000662  |  Nyctalopia
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:2)
HP:0000505  |  Poor vision  |  1
HP:0001268  |  Mental deterioration  |  1
Disease ID 148
Disease refsum disease
Manually Symptom
UMLS  | Name(Total Manually Symptoms:2)
C0741933  |  cardiac symptom
C0235031  |  neurologic symptoms
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Manually Genotypes:2)
Gene Mutation DOI Article Title
PHYHp.R175Wdoi:10.1038/gim.2015.123Expanded genetic screening panel for the Ashkenazi Jewish population
PHYHp.R175W*doi:10.1038/gim.2015.123Expanded genetic screening panel for the Ashkenazi Jewish population
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:8)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs267608252NA5191PEX7umls:C0034960CLINVARNA0.36953026NAPEX76136822621CT
rs267608255NA5191PEX7umls:C0034960CLINVARNA0.36953026NAPEX76136845605AG
rs28939671107673445264PHYHumls:C0034960UNIPROTHuman phytanoyl-CoA hydroxylase: resolution of the gene structure and the molecular basis of Refsum's disease.0.5678916772000NANANANANA
rs28939672107673445264PHYHumls:C0034960UNIPROTHuman phytanoyl-CoA hydroxylase: resolution of the gene structure and the molecular basis of Refsum's disease.0.5678916772000PHYH1013288512GT
rs28939673107096655264PHYHumls:C0034960UNIPROTPhytanoyl-CoA hydroxylase deficiency. Enzymological and molecular basis of classical Refsum disease.0.5678916771999NANANANANA
rs28939674107673445264PHYHumls:C0034960UNIPROTHuman phytanoyl-CoA hydroxylase: resolution of the gene structure and the molecular basis of Refsum's disease.0.5678916772000NANANANANA
rs62619919107673445264PHYHumls:C0034960UNIPROTHuman phytanoyl-CoA hydroxylase: resolution of the gene structure and the molecular basis of Refsum's disease.0.5678916772000PHYH1013283784CT
rs797045100NA5264PHYHumls:C0034960CLINVARNA0.567891677NAPHYH1013283751AC-
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:22)
HP ID HP Name MP ID MP Name Annotation
HP:0010571Elevated levels of phytanic acidMP:0005281increased fatty acid levelelevated concentration of aliphatic monocarboxylic acids derived from or contained in esterified form in an animal or vegetable fat, oil or wax; natural fatty acids commonly have a chain of 4 to 28 carbons (usually unbranched and even-numbered), which may
HP:0005930Abnormality of epiphysis morphologyMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0007256Abnormal pyramidal signsMP:0009940abnormal hippocampus pyramidal cell morphologyany structural anomaly of a multipolar projection neuron in the hippocampus pyramidal cell layer; pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from
HP:0003690Limb muscle weaknessMP:0000747muscle weaknessloss of muscle strength
HP:0000546Retinal degenerationMP:0009412skeletal muscle fiber degenerationpathological deterioration of skeletal muscle fiber tissue, often accompanied by loss of function
HP:0000510Rod-cone dystrophyMP:0003225axonal dystrophyaxon degeneration that may result from genetic abnormalities or inadequate or faulty metabolism
HP:0002922Increased CSF proteinMP:0008469abnormal protein levelanomaly in the amount of any of the macromolecules consisting of long chains of amino acids in peptide linkage
HP:0000496Abnormality of eye movementMP:0012287increased frequency of paradoxical sleepincreased incidence or duration of the sleep stage in which dreams occur and the body undergoes marked changes including rapid eye movement, loss of reflexes, and increased pulse rate and brain activity
HP:0000504Abnormality of visionMP:0012528abnormal zone of polarizing activity morphologyany structural anomaly of the subset of cells found in the posterior mesenchyme region of the vertebrate limb bud; Sonic hedgehog (Shh) produced by ZPA represents the key mediator of the polarizing activity that regulates patterning of the limb along the
HP:0001252Muscular hypotoniaMP:0004144hypotoniadecreased muscle tension resulting in limpness of the muscles in the resting state, not to be confused with weakness
HP:0001760Abnormality of the footMP:0011665d-loop transposition of the great arteriescomplete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th
HP:0000958Dry skinMP:0010678abnormal skin adnexa morphologyany structural anomaly of the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails
HP:0007703Abnormality of retinal pigmentationMP:0011665d-loop transposition of the great arteriescomplete transposition of the great arteries; the d- refers to the dextroposition of the bulboventricular loop (ie, the position of the right ventricle, which is on the right side); in addition, the aorta also tends to be on the right and anterior, and th
HP:0000529Progressive visual lossMP:0010749absent visual evoked potentialabsence of a characteristic electroencephalographic pattern recorded from the occipital area generated in response to retinal stimulation such as flashing lights or inverting a contrasting image; absence may indicate blindness
HP:0000407Sensorineural hearing impairmentMP:0006330syndromic hearing impairmenthearing impairment that is usually associated with malformations of the external ear and other inherited signs and symptoms
HP:0000478Abnormality of the eyeMP:0012069abnormal horizontal basal cell of olfactory epithelium morphologyany structural anomaly of the flat or angular epithelial cell with condensed nuclei and darkly staining cytoplasm containing numerous intermediate filaments inserted into desmosomes contacting surrounding supporting cells, that lie in contact with the bas
HP:0010049Short metacarpalMP:0004634short metacarpal bonesreduced length of the five bones of the forepaws that articulate proximally with the carpal bones and distally with the phalanges
HP:0001635Congestive heart failureMP:0011925abnormal heart echocardiography featureany anomaly in echocardiographic representation of systolic and diastolic function, ventricular compliance, valvular function, or interventricular septum features
HP:0003202Skeletal muscle atrophyMP:0014068abnormal muscle glycogen levelthe normal concentration of a readily converted carbohydrate reserve in muscle tissue
HP:0000083Renal insufficiencyMP:0003335exocrine pancreatic insufficiencyinadequate synthesis and/or secretion of digestive enzymes by the exocrine portion of the pancreas, usually due to loss of acinar tissue from idiopathic atrophy or acute or chronic inflammation, causing maldigestion and malabsorption of nutrients
HP:0012211Abnormal renal physiologyMP:0011682renal glomerulus cystsabnormal membranous sacs in any portion of the renal glomerulus
HP:0001939Abnormality of metabolism/homeostasisMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
Mapped by homologous gene(Total Items:51)
HP ID HP Name MP ID MP Name Annotation
HP:0001252Muscular hypotoniaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001640CardiomegalyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0007141Sensorimotor neuropathyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0005930Abnormality of epiphysis morphologyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0011675ArrhythmiaMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0000546Retinal degenerationMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000508PtosisMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0000662NyctalopiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000529Progressive visual lossMP:0020216decreased circulating complement protein levelless than normal levels of the serum proteins that act sequentially to allow for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes
HP:0003474Sensory impairmentMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0009830Peripheral neuropathyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002164Nail dysplasiaMP:0014175abnormal ciliary epithelium morphologyany structural anomaly of the double layer lining the inner surfaces of the ciliary processes and the pars plana (i.e. the posterior portion of the ciliary body, aka orbicularis ciliari); the outer layer is the pigmented epithelium, which is composed of l
HP:0001638CardiomyopathyMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0003202Skeletal muscle atrophyMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0010049Short metacarpalMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0004374Hemiplegia/hemiparesisMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001744SplenomegalyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000407Sensorineural hearing impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0002093Respiratory insufficiencyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000518CataractMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0001265HyporeflexiaMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0001760Abnormality of the footMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0004689Short fourth metatarsalMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000510Rod-cone dystrophyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001765HammertoeMP:0014062nervous system inclusion bodiesnuclear or cytoplasmic aggregates of stainable substances within cells of the nervous system
HP:0007256Abnormal pyramidal signsMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001761Pes cavusMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000568MicrophthalmiaMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0003690Limb muscle weaknessMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000083Renal insufficiencyMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0002376Developmental regressionMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0001939Abnormality of metabolism/homeostasisMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0010864Intellectual disability, severeMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001251AtaxiaMP:0020301short tonguedecreased length of the mobile mass of muscular tissue and surrounding epithelial tissue occupying the cavity of the mouth and forming part of the floor
HP:0000639NystagmusMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0002652Skeletal dysplasiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0012211Abnormal renal physiologyMP:0014074increased brain glycogen levelgreater than the normal concentration of a readily converted carbohydrate reserve in brain
HP:0000458AnosmiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002922Increased CSF proteinMP:0020215impaired blood coagulationimpaired ability of the blood to clot
HP:0000616MiosisMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000488RetinopathyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001635Congestive heart failureMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0002654Multiple epiphyseal dysplasiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000504Abnormality of visionMP:0013545cleft hard palatecleft in the anterior portion of the palate consisting of bone and mucous membranes; the hard palate is formed from bony processes of the maxilla, premaxilla and palatine bones
HP:0008064IchthyosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000496Abnormality of eye movementMP:0020214susceptible to malignant hyperthermiaincreased susceptibility to hyperthermia triggered by exposure to certain drugs used for general anesthesia, specifically the volatile anesthetic agents and the neuromuscular blocking agent, succinylcholine
HP:0000958Dry skinMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000478Abnormality of the eyeMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0010571Elevated levels of phytanic acidMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000505Visual impairmentMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0007703Abnormality of retinal pigmentationMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
Disease ID 148
Disease refsum disease
Case(Waiting for update.)